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We evaluated the Phoenix automated microbiology system (BD Diagnostic Systems, Sparks, MD) for the identification (ID) and antimicrobial susceptibility testing (AST) of challenge and clinical staphylococci and enterococci recovered from patients in a tertiary-care medical center. In total, 424 isolates were tested: 90 enterococci; 232 Staphylococcus aureus isolates, including 14 vancomycin-intermediate S. aureus isolates; and 102 staphylococci other than S. aureus (non-S. aureus). The Phoenix panels were inoculated according to the manufacturer's instructions. The reference methods for ID comparisons were conventional biochemicals and cell wall fatty acid analysis with the Sherlock microbial identification system (v 3.1; MIDI, Inc. Newark, DE). Agar dilution was the reference AST method. The overall rates of agreement for identification to the genus and the species levels were 99.7% and 99.3%, respectively. All S. aureus isolates and enterococci were correctly identified by the Phoenix panels. For the non-S. aureus staphylococci, there was 98.0% agreement for the ID of 16 different species. The AST results were stratified by organism group. For S. aureus, the categorical agreement (CA) and essential agreement (EA) were 98.2% and 98.8%, respectively. Three of three very major errors (VMEs; 1.7%) were with oxacillin. For non-S. aureus staphylococci, the CA, EA, VME, major errors, and minor error rates were 95.7%, 96.8%, 0.7%, 1.7%, and 2.9%, respectively. The two VMEs were with oxacillin. For the enterococci, there was 100% CA and 99.3% EA. All 36 vancomycin-resistant enterococci were detected by the Phoenix system. The Phoenix system compares favorably to traditional methods for the ID and AST of staphylococci and enterococci.
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http://dx.doi.org/10.1128/JCM.02636-05 | DOI Listing |
Microb Pathog
August 2025
Area of Biochemistry and Molecular Biology, OneHealth-UR Research Group, University of La Rioja, Madre de Dios 53, 26006, Logroño, Spain.
In 2022, an avian influenza outbreak caused a massive mortality of Dalmatian pelicans (Pelecanus crispus, hereafter DP) in their world's largest breeding colony located at Mikri Prespa Lake (Greece), while great white pelicans (Pelecanus onocrotalus, hereafter GWP) were not affected. The aim of this study was to describe bacterial diversity and antimicrobial resistance carriage from choanal clefts of DPs and GWPs, to elucidate differences between the two species of pelicans and age groups. Fifty-two choanal swab samples were collected from 31 nestlings (N) (20 DP/11 GWP) late in the 2022 breeding season, and 21 adults (A) DPs (DP-A) in early 2023.
View Article and Find Full Text PDFBackground Infective endocarditis (IE) is a life-threatening infection of the endocardial surface, most commonly affecting native or prosthetic valves and intracardiac devices. Despite advancements in diagnosis and treatment, IE continues to carry a high mortality risk. Blood cultures remain a cornerstone of diagnosis, typically yielding positive results and enabling identification of the causative organisms.
View Article and Find Full Text PDFArch Soc Esp Oftalmol (Engl Ed)
August 2025
Laboratorio del Instituto Oftálmico, Servicio de Oftalmología, Hospital General Universitario Gregorio Marañón, Madrid, Spain. Electronic address:
Background And Objective: Bacteria isolated in postoperative endophthalmitis (PE) were reduced to cefuroxime-resistant bacteria in cataract surgery with intracameral cefuroxime as prophylaxis; age > 84 years was at risk for PEs caused by Gram-negative-bacteria and Staphylococci; no risks were identified for Enterococci, the most abundant isolations. The prevalence of Enterococci in the preoperative conjunctiva was associated with age > 74 years, diabetes, obesity, and dacryocystorhinostomy-history (DCR-history). The aim of the study is to differentiate the risk of age from that of other patient characteristics, establishing 2 different age groups.
View Article and Find Full Text PDFRheumatology (Oxford)
August 2025
Department of Nephrology, Copenhagen University Hospital-Rigshospitalet, Denmark, Copenhagen.
Objectives: Infections from immunosuppressive treatment are a major cause of hospitalisation and mortality in ANCA-associated vasculitis (AAV). This study examines bloodstream infections (BSIs) in incident AAV patients, comparing incidence, bacterial distribution, and risk to the general population, with emphasis on central venous catheters (CVCs).
Methods: Using Danish nationwide registries, we studied patients diagnosed from 2010 to 2018, followed until first BSI, death, or a maximum of five years.
Front Microbiol
July 2025
Department of Clinical Laboratory, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi, China.
Purpose: To investigate the distribution characteristics and drug resistance of pathogenic bacteria in bloodstream infections, providing a basis for rational clinical treatment.
Patients And Methods: Retrospective analysis of 1,282 pathogenic strains isolated from blood cultures in the intensive care unit (ICU) of the Second Affiliated Hospital of Xi'an Jiaotong University from January 1, 2019, to December 31, 2022.
Results: Gram-positive bacteria (52.