Publications by authors named "Stephane Decroocq"

Understanding crop domestication offers crucial insights into the evolutionary processes that drive population divergence and adaptation. It also informs the identification of genetically diverse wild germplasm, which is essential for breeding and conservation efforts. While domestication has been extensively studied in many Mediterranean fruit trees, the evolutionary history of the almond () remains comparatively underexplored.

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Members of the eukaryotic translation initiation complex are co-opted in viral infection, leading to susceptibility in many crop species, including stone fruit trees (Prunus spp.). Therefore, modification of one of those eukaryotic translation initiation factors or changes in their gene expression may result in resistance.

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Article Synopsis
  • The apricot tree (Prunus armeniaca) serves as a useful model for studying how plants evolve and adapt, with the analysis of nearly 600 apricot genomes leading to significant findings.
  • There are two main genetic groups of apricots, Chinese and European, each having high genetic diversity due to separate domestication from distinct Central Asian wild populations and some gene mixing afterward.
  • Although both groups show similar physical traits, they have different regions of their genomes influenced by natural selection, particularly in areas related to life cycles, fruit quality, and disease resistance, with European apricots exhibiting more selection signals overall.
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Background: Grapevine is a crop of major economic importance, yet little is known about the regulation of shoot development in grapevine or other perennial fruits crops. Here we combine genetic and genomic tools to identify candidate genes regulating shoot development in Vitis spp.

Results: An F2 population from an interspecific cross between V.

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Article Synopsis
  • Domestication is crucial for understanding species diversification, particularly in perennial plants like fruit trees, compared to annual crops.
  • This study analyzed wild and cultivated apricot species across Eurasia using genetic markers, revealing genetic clusters and hybridization effects among different species.
  • The research identified three distinct domestication events for apricots in Europe, Central Asia, and China, indicating ancient gene flow and extensive genetic mixing among cultivated varieties.
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Studying domesticated species and their wild relatives allows understanding of the mechanisms of population divergence and adaptation, and identifying valuable genetic resources. Apricot is an important fruit in the Northern hemisphere, where it is threatened by the Plum pox virus (PPV), causing the sharka disease. The histories of apricot domestication and of its resistance to sharka are however still poorly understood.

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Article Synopsis
  • - The study addresses limitations in identifying individual genes associated with traits in fruit trees by using genome-wide association (GWA) mapping in apricot for Plum Pox Virus (PPV) resistance.
  • - It leverages the genetic diversity of apricot germplasm and utilizes next-generation sequencing alongside the peach genome reference for identifying single nucleotide polymorphisms (SNPs).
  • - The findings validate existing resistance QTL intervals and identify new potential resistance loci, demonstrating the effectiveness of GWA in pinpointing candidate genes for further research.
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Introduction: Grapes are one of the most important fruit crops in the world. The quality of red grape berries greatly depends on skin colour, mainly due to the anthocyanin profile. Today, the American Vitis species have the greatest potential for breeding work.

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Methoxypyrazines (MPs) are strongly odorant volatile molecules with vegetable-like fragrances that are widespread in plants. Some grapevine (Vitis vinifera) varieties accumulate significant amounts of MPs, including 2-methoxy-3-isobutylpyrazine (IBMP), which is the major MP in grape berries. MPs are of particular importance in white Sauvignon Blanc wines.

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Iron is essential to plants for chlorophyll formation as well as for the functioning of various iron-containing enzymes. Iron deficiency chlorosis is a wide-spread disorder of plants, in particular, of those growing on calcareous soils. Among the different ways to control iron deficiency problems for crops, plant material and especially rootstock breeding is a suitable and reliable method, especially for fruit trees and grapes.

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The composition and concentration of anthocyanins of grape berry skins were analyzed in order to assess phenotypic variation between four grape wine varieties belonging to 4 different species: Vitis vinifera, Vitis amurensis, Vitis cinerea and Vitis X champinii. High-performance liquid chromatography coupled to mass spectrometry (LC-MS) and NMR spectroscopy (LC-NMR) were used to separate and identify the structure of anthocyanins present in these species. Combination of LC-MS and LC-NMR data resulted in the identification of 33 anthocyanins.

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A genetic linkage map of grapevine was constructed using a pseudo-testcross strategy based upon 138 individuals derived from a cross of Vitis vinifera Cabernet Sauvignon x Vitis riparia Gloire de Montpellier. A total of 212 DNA markers including 199 single sequence repeats (SSRs), 11 single strand conformation polymorphisms (SSCPs) and two morphological markers were mapped onto 19 linkage groups (LG) which covered 1,249 cM with an average of 6.7 cM between markers.

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Androgenesis, the development of a haploid embryo from a male nucleus, has been shown to result in the instantaneous uncoupling of the transmission of the organelle and nuclear genomes (with the nuclear genome originating from the male parent only and the organelle genomes from the female parent). We report, for the first time, uncoupling resulting from gynogenesis, in Actinidia deliciosa (kiwifruit), a plant species known for its paternal mode of chloroplast inheritance. After pollen irradiation, transmission of nuclear genes from the pollen parent to the progeny was inhibited, but transmission of the chloroplast genome was not.

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