Publications by authors named "Shizuka Koshimizu"

Upon fertilization, male and female nuclei fuse to form the zygotic nucleus in angiosperms. Karyogamy is considered to be essential for proper embryogenesis; however, the transcriptional dynamics during karyogamy in plant zygotes remain unclear. In this study, we performed a single-cell transcriptome analysis of rice zygotes at six early developmental stages (15 min, 30 min, 1 h, 2 h, 4 h, and 6 h after gamete fusion) to reveal gene expression profiles during karyogamy in plant zygotes.

View Article and Find Full Text PDF
Article Synopsis
  • - Hybridization enhances crop biodiversity, with recent success in creating wheat-rice hybrids capable of developing into mature plants, overcoming their typical hybridization barrier.
  • - The study utilized genomic sequencing and fluorescence techniques to analyze the hybrids, revealing they contain DNA from both wheat and rice, including variable amounts of rice mitochondrial DNA.
  • - The creation of OryzaWheat opens new opportunities for genetic resource utilization between different subfamilies of plants, potentially improving crop traits and resilience.
View Article and Find Full Text PDF

The timing of seed germination is controlled by the combination of internal dormancy and external factors. Temperature is a major environmental factor for seed germination. The permissive temperature range for germination is narrow in dormant seeds and expands during after-ripening (AR) (dormancy release).

View Article and Find Full Text PDF

Anisotropic cell expansion is crucial for the morphogenesis of land plants, as cell migration is restricted by the rigid cell wall. The anisotropy of cell expansion is regulated by mechanisms acting on the deposition or modification of cell wall polysaccharides. Besides the polysaccharide components in the cell wall, a layer of hydrophobic cuticle covers the outer cell wall and is subjected to tensile stress that mechanically restricts cell expansion.

View Article and Find Full Text PDF

Background: Land plants exhibit a haplodiplontic life cycle, whereby multicellular bodies develop in both the haploid and diploid generations. The early-diverging land plants, known as bryophytes, have a haploid-dominant life cycle, in which a short-lived multicellular body in the diploid generation, known as the sporophyte, develops on the maternal haploid gametophyte tissues. The moss Physcomitrium (Physcomitrella) patens has become one of the most powerful model systems in evolutionary plant developmental studies.

View Article and Find Full Text PDF

Hibiscus trionum, commonly known as the 'Flower of an Hour', is an easily cultivated plant in the Malvaceae family that is widespread in tropical and temperate regions, including drylands. The purple base part of its petal exhibits structural colour due to the fine ridges on the epidermal cell surface, and the molecular mechanism of ridge formation has been actively investigated. We performed genome sequencing of H.

View Article and Find Full Text PDF

Supplementation with rare earth elements (REEs) such as lanthanum and cerium has been shown to promote plant elongation and/or increase crop yields. On the other hand, there are reports that REE supplementation of plants has no such effect. The appropriate modes for REE utilization and the underlying mechanism are not fully understood.

View Article and Find Full Text PDF
Article Synopsis
  • Reflection light is crucial for understanding our environment, but our visual system has limitations that prevent us from fully utilizing the information contained in reflection light, known as the 'reflectome'.
  • Despite advancements in imaging technologies, there is still a lack of an affordable and versatile system for analyzing biological surfaces.
  • The P-MIRU system addresses this gap by providing an open-source, customizable, and user-friendly multispectral and polarization imaging solution that enhances our ability to visualize and analyze reflection light from biological samples.
View Article and Find Full Text PDF
Article Synopsis
  • Land plant spermatozoids have unique features like spline structures, multilayered structures, and multiple flagella, but the processes behind their development (spermatogenesis) are not fully understood.
  • Researchers identified specific genes, known as BLD10s, that play a crucial role in sperm development by analyzing genetic data and testing their functions in liverworts and mosses.
  • Mutations in BLD10 genes lead to issues in cell structure during sperm formation, indicating that these genes are important for proper chromatin organization and cellular changes necessary for sperm production.
View Article and Find Full Text PDF

Polyploid zygotes with a paternal gamete/genome excess exhibit arrested development, whereas polyploid zygotes with a maternal excess develop normally. These observations indicate that paternal and maternal genomes synergistically influence zygote development via distinct functions. In this study, to clarify how paternal genome excess affects zygotic development, the developmental and gene expression profiles of polyspermic rice zygotes were analyzed.

View Article and Find Full Text PDF

Japanese pear (Pyrus pyrifolia) is a major fruit tree in the family Rosaceae and is bred for fruit production. To promote the development of breeding strategies and molecular research for Japanese pear, we sequenced the transcripts of Japanese pear variety 'Hosui'. To exhaustively collect information of total gene expression, RNA samples from various organs and stages of Japanese pear were sequenced by three technologies, single-molecule real-time (SMRT) sequencing, 454 pyrosequencing, and Sanger sequencing.

View Article and Find Full Text PDF

Upon fertilization in angiosperms, one sperm cell fuses with the egg cell to produce a zygote, and, via karyogamy, the parental genetic information is combined to form the diploid zygotic genome. Recently, analyses with parentally imbalanced rice zygotes indicated that parental genomes are utilized synergistically in zygotes with different functions, and that genes transcribed from the paternal or maternal allele might play important roles in zygotic development. Herein, we first conducted single nucleotide polymorphism-based mRNA-sequencing using intersubspecific rice zygotes.

View Article and Find Full Text PDF

MIKC classic (MIKC)-type MADS-box genes encode transcription factors that function in various developmental processes, including angiosperm floral organ identity. Phylogenetic analyses of the MIKC-type MADS-box family, including genes from non-flowering plants, suggest that the increased numbers of these genes in flowering plants is related to their functional divergence; however, their precise functions in non-flowering plants and their evolution throughout land plant diversification are unknown. Here, we show that MIKC-type MADS-box genes in the moss Physcomitrella patens function in two ways to enable fertilization.

View Article and Find Full Text PDF