Publications by authors named "Shamasoddin Shekh"

Article Synopsis
  • The study investigates the evolution of the miniature conopeptide Li520, highlighting its disulfide isomerase activity by examining its structure and gene sequence.
  • The synthesized peptides, including Li520 and its variants, show varying disulfide reduction potentials, indicating their effectiveness in protein folding and disulfide exchange reactions.
  • Findings suggest that Li520's specific amino acid composition plays a crucial role in its functionality, and the peptide's evolution may aid in developing therapeutic peptides.
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Implementation of the next-generation technologies for gene sequencing of venom duct transcriptome has provided a large number of peptide sequences of marine cone snails. Emerging technologies on computational platforms are now rapidly evolving for the accurate predictions of the 3D structure of the polypeptide using the primary sequence. The current report aims to integrate the information derived from these two technologies to develop the concept of structure-aided function assignment of Conus peptides.

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A series of novel sulfonamide and acetamide derivatives of pyrimidine were synthesized and their antimicrobial activities were assessed. Based on the Microbroth dilution method, the minimum inhibitory concentration (MIC) of the synthesized compounds demonstrated moderate to good levels of antifungal and antibacterial activity. Structure-activity relationship analysis suggested that the presence of electron-withdrawing groups, such as halogens, nitrile, and nitro groups, on the pyrimidine ring contributed to the enhanced antimicrobial potency, while electron-donating substituents led to a decrease in activity.

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Temporin-SHf is a linear, ultra-short, hydrophobic, α-helix, and phe-rich cationic antimicrobial peptide. The antitumor activities and mechanism of temporin-SHf-induced cancer cell death are unknown. The temporin-SHf was synthesized by solid-phase Fmoc chemistry and antimicrobial and antitumor activities were investigated.

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Two novel redox conopeptides with proline residues outside and within the active site disulfide loop were derived from the venom duct transcriptome of the marine cone snails and . Mature peptides with possible post-translational modification of 4-trans-hydroxylation of proline, namely, Fr874, Fr890[P1O], Fr890[P2O], Fr906, Am1038, and Am1054, have been chemically synthesized and characterized using mass spectrometry. The estimated reduction potential of cysteine disulfides of synthetic peptides varied from -298 to -328 mV, similar to the active site cysteine disulfide motifs of the redox family of proteins.

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Article Synopsis
  • The inhibitory cystine knot (ICK) motif is a unique and stable structure found in various organisms, characterized by a specific arrangement of disulfide bonds among cysteine residues that creates a knotted shape.
  • Analysis of crystal and NMR structures shows that the conformation of the disulfides in ICK is highly conserved, with distinct patterns observed in both methods: X-ray structures show a majority of specific conformations, while NMR reveals some variability.
  • The consistent conformation across different structural techniques suggests that the ICK motif has evolved for optimal function, maintaining its structural integrity despite variations in 3D forms.
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Photostabilizers have been used to impart stability to an FDA-approved chemical UV-A filter avobenzone against the UV-A radiations and sunlight. The thiol group of glutathione plays a critical role in imparting the photostabilization activity of glutathione on avobenzone. The current report aims to evaluate the photostabilization activity of multiple thiols containing cysteine peptides on avobenzone.

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Distinct differences have been observed between L-tryptophan and D-tryptophan containing contryphan-Ar1131 in oxidative folding, trypsin binding, and photostabilization activity on avobenzone. [W] contryphan-Ar1131 and [w] contryphan-Ar1131 were chemically synthesized and characterized using RP-HPLC and mass spectrometry. Structural differences due to the change of configuration of tryptophan were evident from the optimized structures of contryphan-Ar1131 using density functional theory (DFT).

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Background: Tigerinins are antimicrobial peptides (AMPs) derived from the skin secretions of the Indian bullfrog Hoplobatrachus tigerinus.

Methods: Tigerinin-1 (FCTMIPIPRCY-Am) peptide was synthesized by solid-phase Fmoc chemistry and investigated its antitumor activities.

Results: Tigerinin-1 was cytotoxic to human cancer cells.

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The products of the Friedlander reaction, i.e., 1,8-naphthyridines, have far-reaching impacts in materials science, chemical biology, and medicine.

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The tetrapeptides Li504 and Li520, differing in the modification of the 4--hydroxylation of proline, are novel conopeptides derived from the venom duct transcriptome of the marine cone snail . These predicted mature peptides are homologous to the active site motif of oxidoreductases that catalyze the oxidation, reduction, and rearrangement of disulfide bonds in peptides and proteins. The estimated reduction potential of the disulfide of Li504 and Li520 is within the range of disulfide reduction potentials of oxidoreductases, indicating that they may catalyze the oxidative folding of conotoxins.

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