Publications by authors named "Satyajit Mahapatra"

The presence of pests in soil costs the agriculture industry billions of dollars every year since it reduces crop yields and raises preventive costs. The pest detection in soil is vital for maintaining healthy crops, optimizing pest management, and ensuring economic and ecological sustainability. There are several invasive and non-invasive methods available for pest detection, where invasive methods are costly as well as time-consuming compared to the non-invasive methods.

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In recent years, Transformer-based large language models (LLMs) have significantly improved upon their text generation capability. Mental health is a serious concern that can be addressed using LLM-based automated mental health counselors. These systems can provide empathetic responses to individuals in need while considering the negative beliefs, stigma, and taboos associated with mental health issues.

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Skin cancer is a lethal disease, and its early detection plays a pivotal role in preventing its spread to other body organs and tissues. Artificial Intelligence (AI)-based automated methods can play a significant role in its early detection. This study presents an AI-based novel approach, termed 'DualAutoELM' for the effective identification of various types of skin cancers.

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After exocytosis, release sites are cleared of vesicular residues to replenish with transmitter-filled vesicles. Endocytic and scaffold proteins are thought to underlie this site-clearance mechanism. However, the physiological significance of this mechanism at diverse mammalian central synapses remains unknown.

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Introduction: Plant-microbe interactions play a vital role in the development of strategies to manage pathogen-induced destructive diseases that cause enormous crop losses every year. Rice blast is one of the severe diseases to rice () due to () fungus. Protein-protein interaction (PPI) between rice and fungus plays a key role in causing rice blast disease.

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In recent times, speech-based automatic disease detection systems have shown several promising results in biomedical and life science applications, especially in the case of respiratory diseases. It provides a quick, cost-effective, reliable, and non-invasive potential alternative detection option for COVID-19 in the ongoing pandemic scenario since the subject's voice can be remotely recorded and sent for further analysis. The existing COVID-19 detection methods including RT-PCR, and chest X-ray tests are not only costlier but also require the involvement of a trained technician.

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Elevation of soluble wild-type (WT) tau occurs in synaptic compartments in Alzheimer's disease. We addressed whether tau elevation affects synaptic transmission at the calyx of Held in slices from mice brainstem. Whole-cell loading of WT human tau (h-tau) in presynaptic terminals at 10-20 µM caused microtubule (MT) assembly and activity-dependent rundown of excitatory neurotransmission.

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Feature fusion and selection strategies have been applied to improve accuracy in the prediction of protein-protein interaction (PPI). In this paper, an embedded feature selection framework is developed by integrating a cost function based on analysis of variance (ANOVA) with the particle swarm optimization (PSO), termed AVPSO. Initially, the features of the protein sequences extracted using pseudo-amino acid composition (PseAAC), conjoint triad composition, and local descriptor are fused.

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In this paper, for accurate prediction of protein-protein interaction (PPI), a novel hybrid classifier is developed by combining the functional-link Siamese neural network (FSNN) with the light gradient boosting machine (LGBM) classifier. The hybrid classifier (FSNN-LGBM) uses the fusion of features derived using pseudo amino acid composition and conjoint triad descriptors. The FSNN extracts the high-level abstraction features from the raw features and LGBM performs the PPI prediction task using these abstraction features.

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Article Synopsis
  • Tubulin is targeted for anti-cancer drug design, and identifying hotspots in this protein can aid in drug discovery.
  • Machine learning currently struggles to pinpoint hotspots linked to specific biological functions, prompting the development of a new method combining resonant recognition model (RRM) and Stockwell Transform (ST).
  • This new method successfully identifies 60% of experimentally verified hotspots for Tubulin drugs compared to only 20% by existing machine learning methods and also predicts additional hotspots for future exploration.
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Understanding the behavioral process of life and disease-causing mechanism, knowledge regarding protein-protein interactions (PPI) is essential. In this paper, a novel hybrid approach combining deep neural network (DNN) and extreme gradient boosting classifier (XGB) is employed for predicting PPI. The hybrid classifier (DNN-XGB) uses a fusion of three sequence-based features, amino acid composition (AAC), conjoint triad composition (CT), and local descriptor (LD) as inputs.

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Key Points: Post-tetanic potentiation (PTP) is attributed mainly to an increase in release probability (P ) and/or readily-releasable pool (RRP) in many synapses, but the role of endocytosis in PTP is unknown. Using the calyx of Held synapse from tissue-specific dynamin-1 knockout (cKO) mice (P16-20), we report that cKO synapses show enhanced PTP compared to control. We found significant increases in both spontaneous excitatory postsynaptic current (spEPSC) amplitude and RRP size (estimated by a train of 30 APs at 100 Hz) in cKO over control during PTP.

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Article Synopsis
  • Dynamin is a large protein that helps recycle synaptic vesicles for neurotransmitter release, and inhibiting it generally impairs this process.
  • In experiments with mice lacking dynamin-1, there was unexpected enhanced neurotransmission and less synaptic depression during high-frequency stimulation, despite some increased failures in transmission.
  • These findings suggest that dynamin-1 may also influence short-term synaptic function beyond just vesicle recycling, particularly during rapid firing of neurons.
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Mouse chromaffin cells (MCCs) express high densities of L-type Ca2+ channels (LTCCs), which control pacemaking activity and catecholamine secretion proportionally to their density of expression. In vivo phosphorylation of LTCCs by cAMP-PKA and cGMP–PKG, regulate LTCC gating in two opposing ways: the cAMP-PKA pathway potentiates while the cGMP–PKG cascade inhibits LTCCs. Despite this, no attempts have been made to answer three key questions related to the two Cav1 isoforms expressed in MCCs (Cav1.

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Mouse and rat chromaffin cells (MCCs, RCCs) fire spontaneously at rest and their activity is mainly supported by the two L-type Ca(2+) channels expressed in these cells (Ca(v)1.2 and Ca(v)1.3).

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Article Synopsis
  • L-type Ca(2+) channels (LTCCs) play a crucial role in cell excitability by allowing calcium ions to enter cells during depolarization, influencing various physiological processes like muscle contraction and hormone release.
  • The specific isoform Ca(v)1.3 is particularly important for generating pacemaker currents in neurons and endocrine cells, supporting their spontaneous firing due to its unique activation and inactivation properties.
  • Recent studies have shown how Ca(v)1.3 interacts with BK channels to modulate firing frequency and action potential repolarization, shedding light on how these channels work together to maintain cell excitability.
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Voltage-gated L-type calcium channels (LTCCs) are expressed in adrenal chromaffin cells. Besides shaping the action potential (AP), LTCCs are involved in the excitation-secretion coupling controlling catecholamine release and in Ca (2+) -dependent vesicle retrieval. Of the two LTCCs expressed in chromaffin cells (CaV1.

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We studied wild-type (WT) and Cav1.3(-/-) mouse chromaffin cells (MCCs) with the aim to determine the isoform of L-type Ca(2+) channel (LTCC) and BK channels that underlie the pacemaker current controlling spontaneous firing. Most WT-MCCs (80%) were spontaneously active (1.

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