Proc Natl Acad Sci U S A
September 2025
The Gulf of Panama's (GOP) seasonal upwelling system has consistently delivered cool, nutrient-rich waters via northerly trade winds every January-April for at least 40 y. Here, we document the failure of this normally highly predictable phenomenon in 2025. Data suggest that the cause was a reduction in Panama wind-jet frequency, duration, and strength, possibly related to the Intertropical Convergence Zone (ITCZ) position during the 2024-2025 La Niña, though the mechanisms remain unclear.
View Article and Find Full Text PDFPhilos Trans R Soc Lond B Biol Sci
July 2025
The Pacific coast of the Southern Central American Isthmus is a highly productive and biodiverse region with a rich human history. Although the interaction of the oceans, climate, biodiversity and early human systems has shaped the region's ecology, research has remained largely disconnected, arising independently from discrete disciplines. To unite this disparate research, we reviewed and synthesized the historical ecology of the Isthmus from the Last Glacial Maximum to the rise of industrial fishing in the 1950s.
View Article and Find Full Text PDFProc Natl Acad Sci U S A
July 2025
Understanding how humans have altered coral reef food webs remains challenging due to the absence of prehistoric baselines. Here, we use fish remains preserved in fossil and archaeological deposits from Panamá and the Dominican Republic to explore how Caribbean reef fish mortality patterns have changed over millennia. By quantifying accumulation rates of shark dermal denticles (scales) and bony fish otoliths (ear stones) in reef sediments, we assess relative fish abundance, while otolith size serves as a proxy for body size at death.
View Article and Find Full Text PDFObjectives: Burial space reuse and prolonged interaction with the dead were common practices in the Isthmo-Colombian Area, dating back to at least the Early Ceramic Period in the Greater Coclé region. However, biological and social relationships of individuals interred in collective burial contexts remain unclear. Here, we explore intra-cemetery biological variation through a biological distance analysis of individuals interred in large mortuary features from the first mortuary horizon at the site of Cerro Juan Díaz in Panamá.
View Article and Find Full Text PDFMost anthropogenic nitrogen (N) reaches coastal waters via rivers carrying increasing loads of sewage, fertilizer, and sediments. To understand anthropogenic N impacts, we need to understand historical N-dynamics before human influence. Stable isotope ratios of N preserved in carbonates are one way to create temporal N records.
View Article and Find Full Text PDFCholesterol biosynthesis supports proliferation and drives resistance to tyrosine kinase inhibitor (TKI) therapy in hepatocellular carcinoma (HCC). Here, we present a protocol for using stable isotopic tracers to track the biosynthesis of cholesterol in cultured HCC cells. We describe steps for cell preparation, incubation, separation, and homogenization.
View Article and Find Full Text PDFFish have one of the highest occurrences of individual specialization in trophic strategies among Eukaryotes. Yet, few studies characterize this variation during trophic niche analysis, limiting our understanding of aquatic food web dynamics. Stable isotope analysis (SIA) with advanced Bayesian statistics is one way to incorporate this individual trophic variation when quantifying niche size.
View Article and Find Full Text PDFAnn Rev Mar Sci
January 2023
Nitrogen is a major limiting element for biological productivity, and thus understanding past variations in nitrogen cycling is central to understanding past and future ocean biogeochemical cycling, global climate cycles, and biodiversity. Organic nitrogen encapsulated in fossil biominerals is generally protected from alteration, making it an important archive of the marine nitrogen cycle on seasonal to million-year timescales. The isotopic composition of fossil-bound nitrogen reflects variations in the large-scale nitrogen inventory, local sources and processing, and ecological and physiological traits of organisms.
View Article and Find Full Text PDFUnlabelled: Accumulating evidence has demonstrated that drug resistance can be acquired in cancer through the repopulation of tumors by cancer stem cell (CSC) expansion. Here, we investigated mechanisms driving resistance and CSC repopulation in hepatocellular carcinoma (HCC) as a cancer model using two drug-resistant, patient-derived tumor xenografts that mimicked the development of acquired resistance to sorafenib or lenvatinib treatment observed in patients with HCC. RNA sequencing analysis revealed that cholesterol biosynthesis was most commonly enriched in the drug-resistant xenografts.
View Article and Find Full Text PDFObservations of coral reef losses to climate change far exceed our understanding of historical degradation before anthropogenic warming. This is a critical gap to fill as conservation efforts simultaneously work to reverse climate change while restoring coral reef diversity and function. Here, we focused on southern China's Greater Bay Area, where coral communities persist despite centuries of coral mining, fishing, dredging, development, and pollution.
View Article and Find Full Text PDFHistorical coral skeleton (CS) δ O and δ N records were produced from samples recovered from sedimentary deposits, held in natural history museum collections, and cored into modern coral heads. These records were used to assess the influence of global warming and regional eutrophication, respectively, on the decline of coastal coral communities following the development of the Pearl River Delta (PRD) megacity, China. We find that, until 2007, ocean warming was not a major threat to coral communities in the Pearl River estuary; instead, nitrogen (N) inputs dominated impacts.
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