Publications by authors named "Eike Matthias Wacker"

Psoriasis is a common, debilitating immune-mediated skin disease. Genetic studies have identified biological mechanisms of psoriasis risk, including those targeted by effective therapies. However, the genetic liability to psoriasis is not fully explained by variation at robustly identified risk loci.

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Throughout gestation, the female body undergoes a series of transformations, including profound alterations in intestinal microbial communities. Changes gradually increase toward the end of pregnancy and comprise reduced α-diversity of microbial communities and an increased propensity for energy harvest. Despite the importance of the intestinal microbiota for the pathophysiology of inflammatory bowel diseases, very little is known about the relationship between these microbiota shifts and pregnancy-associated complications of the disease.

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Article Synopsis
  • The study investigates the molecular differences between primary sclerosing cholangitis (PSC) and ulcerative colitis (UC) using RNA sequencing on blood samples from patients with these conditions and healthy controls.
  • Findings reveal that while UC and PSC share some features, they are distinct diseases, particularly highlighting different gene expressions related to neutrophil activation and metabolism.
  • Machine learning analysis shows PSC and UC can be accurately distinguished, reinforcing the idea that colitis symptoms in PSC should be considered a separate disease rather than a variant of UC.
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Psoriasis is a common, debilitating immune-mediated skin disease. Genetic studies have identified biological mechanisms of psoriasis risk, including those targeted by effective therapies. However, the genetic liability to psoriasis is not fully explained by variation at robustly identified risk loci.

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Article Synopsis
  • The study introduces MAGScoT, a new tool designed for efficiently reconstructing high-quality metagenome-assembled genomes (MAGs) from shotgun metagenomic data, addressing limitations of current single binning tools.
  • MAGScoT offers improved performance over existing bin-refinement solutions, enhancing both the quality and quantity of MAGs while reducing computation time and resource use.
  • The tool can be accessed easily on GitHub and as a user-friendly Docker container, with additional data available online for further reference.
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Genetic correlations and an increased incidence of psychiatric disorders in inflammatory-bowel disease have been reported, but shared molecular mechanisms are unknown. We performed cross-tissue and multiple-gene conditioned transcriptome-wide association studies for 23 tissues of the gut-brain-axis using genome-wide association studies data sets (total 180,592 patients) for Crohn's disease, ulcerative colitis, primary sclerosing cholangitis, schizophrenia, bipolar disorder, major depressive disorder and attention-deficit/hyperactivity disorder. We identified NR5A2, SATB2, and PPP3CA (encoding a target for calcineurin inhibitors in refractory ulcerative colitis) as shared susceptibility genes with transcriptome-wide significance both for Crohn's disease, ulcerative colitis and schizophrenia, largely explaining fine-mapped association signals at nearby genome-wide association study susceptibility loci.

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