Aphis glycines virus 1, a new bicistronic virus with two functional internal ribosome entry sites, is related to a group of unclassified viruses in the .

A novel picorna-like virus, provisionally named Aphis glycines virus 1 (ApGlV1) was discovered by high-throughput sequencing of soybean total RNAs and detected in suction trap-collected . The ApGlV1 genome contains two large ORFs organized similar to those of dicipiviruses in the where ORFs 1 and 2 encode structural and nonstructural proteins, respectively. Both ORFs are preceded by internal ribosome entry site (IRES) elements.

Spatial Distribution of Soybean Cyst Nematode in Research Plots.

Soybean cyst nematode (SCN; Ichinohe) is a major pathogen of soybean [ (L.) Merr.] in the United States.

A Culture-Independent PCR-Based Assay to Detect the Root Rot Pathogen Fusarium solani Species Complex 11 from Soybean Roots and Soil.

Fusarium solani species complex (FSSC) 11 is the primary phylogenetic species of FSSC causing root rot in soybean in the north-central United States. A polymerase chain reaction (PCR)-based assay was developed to identify and differentiate FSSC 11 from the less aggressive FSSC 5 and other Fusarium and Pythium spp. associated with soybean roots.

Probability Models Based on Soil Properties for Predicting Presence-Absence of Pythium in Soybean Roots.

Associations between soil properties and Pythium groups on soybean roots were investigated in 83 commercial soybean fields in North Dakota. A data set containing 2877 isolates of Pythium which included 26 known spp. and 1 unknown spp.

Molecular characterization of a new soybean-infecting member of the genus Nepovirus identified by high-throughput sequencing.

The complete nucleotide sequence of a new soybean-infecting member of the genus Nepovirus (provisionally named "soybean latent spherical virus" [SLSV]) was identified by high-throughput sequencing of RNAs from soybean leaf samples from North Dakota, USA. The sequences of RNAs 1 (8,190 nt) and 2 (5,788 nt) were completed by rapid amplification of cDNA ends. Each contained a single long open reading frame and a 3' nontranslated region of greater than 1,500 nt.

Oomycete Species Associated with Soybean Seedlings in North America-Part II: Diversity and Ecology in Relation to Environmental and Edaphic Factors.

Soybean (Glycine max (L.) Merr.) is produced across a vast swath of North America, with the greatest concentration in the Midwest.

Oomycete Species Associated with Soybean Seedlings in North America-Part I: Identification and Pathogenicity Characterization.

Oomycete pathogens are commonly associated with soybean root rot and have been estimated to reduce soybean yields in the United States by 1.5 million tons on an annual basis. Limited information exists regarding the frequency and diversity of oomycete species across the major soybean-producing regions in North America.

Comparative Transcriptome Analysis of Resistant and Susceptible Common Bean Genotypes in Response to Soybean Cyst Nematode Infection.

Soybean cyst nematode (SCN; Heterodera glycines Ichinohe) reproduces on the roots of common bean (Phaseolus vulgaris L.) and can cause reductions in plant growth and seed yield. The molecular changes in common bean roots caused by SCN infection are unknown.

Identification of Diverse Mycoviruses through Metatranscriptomics Characterization of the Viromes of Five Major Fungal Plant Pathogens.

Unlabelled: Mycoviruses can have a marked effect on natural fungal communities and influence plant health and productivity. However, a comprehensive picture of mycoviral diversity is still lacking. To characterize the viromes of five widely dispersed plant-pathogenic fungi, Colletotrichum truncatum, Macrophomina phaseolina, Diaporthe longicolla, Rhizoctonia solani, and Sclerotinia sclerotiorum, a high-throughput sequencing-based metatranscriptomic approach was used to detect viral sequences.

Genetic Variation of Sclerotinia sclerotiorum from Multiple Crops in the North Central United States.

Sclerotinia sclerotiorum is an important pathogen of numerous crops in the North Central region of the United States. The objective of this study was to examine the genetic diversity of 145 isolates of the pathogen from multiple hosts in the region. Mycelial compatibility groups (MCG) and microsatellite haplotypes were determined and analyzed for standard estimates of population genetic diversity and the importance of host and distance for genetic variation was examined.

Transfection of Sclerotinia sclerotiorum with in vitro transcripts of a naturally occurring interspecific recombinant of Sclerotinia sclerotiorum hypovirus 2 significantly reduces virulence of the fungus.

Unlabelled: A recombinant strain of Sclerotinia sclerotiorum hypovirus 2 (SsHV2) was identified from a North American Sclerotinia sclerotiorum isolate (328) from lettuce (Lactuca sativa L.) by high-throughput sequencing of total RNA. The 5'- and 3'-terminal regions of the genome were determined by rapid amplification of cDNA ends.

Identification and Pathogenicity of Pythium on Soybean in North Dakota.

The oomycete Pythium comprises one of the most important groups of seedling pathogens affecting soybean. There has been limited research on Pythium spp. pathogenic on soybean in the northern Great Plains.

Reproduction of Soybean Cyst Nematode on Dry Bean Cultivars Over Multiple Generations.

Phaseolus vulgaris is a host of soybean cyst nematode (SCN; Heterodera glycines), a pathogen recently introduced into the major dry bean production area of North Dakota and northern Minnesota. The nematode reproduces less on most bean classes compared with soybean but can reduce plant growth and seed yield. An important question is the following: will SCN adapt to dry bean and, over time, increase in ability to reproduce on roots? To answer this question, the following experiments were conducted with cultivars from three bean classes.

Effect of Soybean Cyst Nematode on Growth of Dry Bean in the Field.

Phaseolus vulgaris is a host of soybean cyst nematode (SCN; Heterodera glycines), but the effects of SCN on growth of dry bean plants are poorly understood. To study the effects of SCN (HG type 0) on dry bean, the cultivars GTS-900 (pinto bean), Montcalm (kidney bean), and Mayflower (navy bean) were evaluated in eight field experiments at four locations between 2007 and 2009. Plants were grown in a pasteurized Arveson loam soil that was infested with SCN eggs at densities ranging from 0 to 10,000 eggs/100 cm soil.

Reproduction of Soybean Cyst Nematode on Dry Bean Cultivars Adapted to North Dakota and Northern Minnesota.

Dry bean (Phaseolus vulgaris) is a host of the soybean cyst nematode (SCN; Heterodera glycines). Twenty-four cultivars of dry bean representing pinto, navy, black, and kidney bean classes were evaluated for host suitability for SCN HG type 0 in the greenhouse. Females of SCN developed normally on all dry bean cultivars in 30 days.

Sclerotinia sclerotiorum (Lib.) de Bary: biology and molecular traits of a cosmopolitan pathogen.

Unlabelled: SUMMARY Sclerotinia sclerotiorum (Lib.) de Bary is a necrotrophic fungal pathogen causing disease in a wide range of plants. This review summarizes current knowledge of mechanisms employed by the fungus to parasitize its host with emphasis on biology, physiology and molecular aspects of pathogenicity.

Reaction of Soybean Cultivars to Isolates of Fusarium solani from the Red River Valley.

Five isolates of Fusarium solani, originally isolated from diseased soybean roots in the Red River Valley (RRV) of Minnesota and North Dakota, were evaluated for their ability to cause symptoms on 10 genetically diverse soybean cultivars. Taproots of 2-week-old plants were inoculated with F. solani-infested oat kernels, and 3 and 10 weeks later, plants were evaluated for root rot and foliar symptoms.